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Table 2 PCR primer sequences used for amplification of DNA for Sequenom analysis

From: Polymorphisms in the selenoprotein S and 15-kDa selenoprotein genes are associated with altered susceptibility to colorectal cancer

Gene/SNP

PCR primers (Fwr, Rev)

Extension primer

MnSOD (SOD2)

rs4880

ACGTTGGATGTTCTGCCTGGAGCCCAGATA

and

ACGTTGGATGCTGTGCTTTCTCGTCTTCAG

AGCCCAGATACCCCAAA

SELS

rs34713741

ACGTTGGATGGGAACGTTCTGTGCTATCTC

and

ACGTTGGATGTCGGTAAGAAATCCGTGAAC

CTATCTCTTGGCTTGAGT

SEPP1

rs3877899

ACGTTGGATGGCTTATGGTGGTGATGAAGG

and

ACGTTGGATGGCTTTCAGAGAATCAGCAAC

AGCAGGATGAGTAGGAG

SEPP1

rs7579

ACGTTGGATGGTGTCTAGACTAAATTGGGG

and

ACGTTGGATGCAGGCAAAAAAGTGAGAATG

ACTAAATTGGGGAGTATGT

SEP15

rs5845

ACGTTGGATGTGGTCCAGTTTTACGAACAA

and

ACGTTGGATGACACAGCACATGAGGCATAG

AGTTTTACGAACAACAGATTT

SEP15

rs5859

ACGTTGGATGTGCGTTAATGAAGACTACAC

and

ACGTTGGATGGCCAAGTATGTATCTGATCC

AGACTACACAGAAAACCTTTCTA

GPX4

rs713041

ACGTTGGATGCACAAGTGTGTGGCCCCGC

and

ACGTTGGATGTTTGCAGGCAGGCCGTCAT

CCCTGCCCACGCCCT

  1. Individuals were genotyped for seven SNPs using Sequenom analysis. Amplification and extension primers used for the multiplex analysis are shown