Table 3 Microbiota changes induced by nutritional modulation
Nutritional modulation | Species | Microorganisms changed in abundance | References | |
|---|---|---|---|---|
Increase | Decrease | |||
Protein, fat | Human | Bacteroides, Alistipes and Parabacteroides | – | Wu et al. (2011) |
Carbohydrate | Human | Prevotella, Paraprevotella (phylum Bacteroidetes) and Catenibacterium (phylum Firmicutes) | – | Wu et al. (2011) |
Animal-based diet (meat, eggs, and cheeses) | Human | Alistipes, Bilophila and Bacteroidels | Roseburia, Eubacterium rectale and Ruminococcus bromii | David et al. (2014) |
Maternal high-fat diet | Macaca fuscata | Ruminococcus and Dialister | Campylobacter spp. and Helicobacter spp. | Ma et al. (2014) |
Parental high-fat diet | Mouse | The ratio of Firmicutes to Bacteroidetes | – | Myles et al. (2013) |
High-fat diet | Mouse | The ratio of Firmicutes to Bacteroidetes, Ruminococcaceae and Rikenellaceae | Bacteroidaceae, Clostridiales, and Provotellaceae | Kim et al. (2012) |
High-fat diet | Mouse | proportions of Firmicutes, Deferribacteres, and Proteobacteria | – | Walker et al. (2014) |
High-protein diet | Rat | Lactobacillus | Lachnospiraceae | Pioli et al. (2013) |
Potato fiber | Dog | Faecalibacterium | – | Panasevich et al. (2015) |
Formula fed infants | Human | Ruminococcus | Lactobacillus | O’Sulliyan et al. (2013) |
Saturated fat (from milk) | Human | Bilophila wadsworthia | – | Devkota et al. (2012) |
Carbohydrate-rich diet | Human | Archaea Methanobrevibacter | – | Samuel and Gordon (2006) |
Agrarian diet (carbohydrates, fiber, nonanimal protein) | Human | Prevotella and Xylanibacter | Firmicutes | De Filippo et al. (2010) |
Fiber (starches or nonstarch polysaccharides) | Human | Proportions of Ruminococcus bromii and Eubacterium rectale | – | Albenberg and Wu (2014) |
Milk oligosaccharides | Human | Bifidobacteria | – | Albenberg and Wu (2014) |
Dietary emulsifiers (carboxymethyl-cellulose, polysobate-80) | Mouse | Mucolytic operational tazanomic units (e.g., Ruminococcus gnavus), Verrucomimicrobia phyla (e.g., Akkermansia muciniphila), proteobacteria | Bacteroidales | Chassaing et al. (2015) |
Artificial sweeteners (saccharin, sucralose or aspartame) | Mouse | Bacteroides genus (Bacteroides vulgatus, Bacteroides vulgatus), Orovidencia rettgeri, Parabacteroides distasonis, Staphylococcus aureus | Clostridiales order (Candidatus Arthromitus), Akkermansia muciniphila | Suez et al. (2014) |
Artificial sweeteners (saccharin, sucralose or aspartame) | Human | Enterobacteriaceae family, Deltaproteobacteria class, Actinobacteria phylum | Â | Suez et al. (2014) |